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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146274163_146276272_R

Intron Information:

Intron Rank:
134788
Intron Class:
major
Intron Phase:
Intron Coordinates:
146274163 - 146276272
Intron Length:
2110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGTC
5'SS Class:
major
3'SS Sequence:
TTCTCTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TTTTTCTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
74.7
33.7
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
83
0.74
0.8
78
29.2
Minor 5ss
42.7
-0.8
3.2
60.6
44.5
Minor BPS
65.8
0.58
1.9
88.18
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019582
146265030 - 146276310
11281