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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146281315_146286778_R

Intron Information:

Intron Rank:
138696
Intron Class:
major
Intron Phase:
Intron Coordinates:
146281315 - 146286778
Intron Length:
5464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040348
146277534 - 146287269
9736