Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146295097_146346366_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

146295097 - 146346366

Intron Length:

51270

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTCGGA

5'SS Class:

major

3'SS Sequence:

TTATGTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

GGACCCAAGACA

Flanking Amino Acid:

EEDEDHHHHPG*

Intron Amino Acid Position:

329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.1

52.4

40.8

Major BPS

71.2

0.53

37.5

Major PPT

86.8

0.83

0.8

84.8

35.6

Minor 5ss

29.3

-2.4

3.4

38.7

46.4

Minor BPS

-0.4

1.9

51.74

39.1

Associated Gene:

Gene:

LRATD2

Ensembl Gene ID:

ENSAPLG00000002038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002033

146295092 - 146347351

52260