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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146362162_146371347_F

Intron Information:

Intron Rank:
133492
Intron Class:
major
Intron Phase:
Intron Coordinates:
146362162 - 146371347
Intron Length:
9186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
GCATCAAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
84.1
0.77
0.8
81
31
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
42.9
-0.4
2
58.82
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038104
146362009 - 146376788
14780
ENSAPLT00000031706
146361892 - 146372546
10655
ENSAPLT00000024869
146354142 - 146371657
17516