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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146371453_146372038_F

Intron Information:

Intron Rank:
133494
Intron Class:
major
Intron Phase:
Intron Coordinates:
146371453 - 146372038
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TATTGTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTGTATCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76
0.58
0.9
69.5
40.2
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
45.6
-0.3
2.3
65.06
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038470
146354142 - 146372546
18405
ENSAPLT00000031706
146361892 - 146372546
10655