About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146371742_146372038_F

Intron Information:

Intron Rank:
133496
Intron Class:
major
Intron Phase:
Intron Coordinates:
146371742 - 146372038
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGCC
5'SS Class:
major
3'SS Sequence:
TATTGTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTGTATCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
60.1
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76
0.58
0.9
69.5
40.2
Minor 5ss
35.8
-1.6
3.6
51.1
45.6
Minor BPS
45.6
-0.3
2.3
65.06
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038104
146362009 - 146376788
14780