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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146372164_146372268_F

Intron Information:

Intron Rank:
133497
Intron Class:
major
Intron Phase:
Intron Coordinates:
146372164 - 146372268
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
TTCATTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATGGCTTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.1
41.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
80.8
0.69
0.8
75.9
32.6
Minor 5ss
34.4
-1.8
3.5
46
49.3
Minor BPS
54
-0
1.5
55.58
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021807
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038104
146362009 - 146376788
14780