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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146398553_146409150_F

Intron Information:

Intron Rank:
131802
Intron Class:
major
Intron Phase:
Intron Coordinates:
146398553 - 146409150
Intron Length:
10598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAGTAG
5'SS Class:
major
3'SS Sequence:
TGAGCTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTTTTTTGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
61.6
39.4
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
75.7
0.58
1
68.5
41.9
Minor 5ss
41.5
-0.9
3.2
54.5
49.7
Minor BPS
63.2
0.49
1.7
84.31
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020745
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035915
146398129 - 146410175
12047