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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146413748_146429221_F

Intron Information:

Intron Rank:
146941
Intron Class:
major
Intron Phase:
Intron Coordinates:
146413748 - 146429221
Intron Length:
15474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGTCCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
75.7
0.58
0.9
71.2
38.6
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
67.9
0.65
1.6
82.71
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029136
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027454
146413645 - 146435052
21408