About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14650861_14655516_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14650861 - 14655516
Intron Length:
4656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
ATAGTGTTAACC
Flanking Amino Acid:
FSIRYEVFKRGPECSRNFTS
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
51
0.01
2.1
64.86
40.9

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160