Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146518949_146522286_R

Intron Information:

Intron Rank:

132615

Intron Class:

major

Intron Phase:

Intron Coordinates:

146518949 - 146522286

Intron Length:

3338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCATCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAT

U12 Branch Point Sequence:

GTGTCATCAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

74.1

38.4

Major BPS

83.5

0.83

0.8

71.6

36.4

Major PPT

61.2

0.25

1.1

60.4

39.5

Minor 5ss

-2.2

3.2

40.2

45.9

Minor BPS

47.6

-0.3

55.49

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018592

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024260

146516527 - 146522519

5993