Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146567709_146576574_R

Intron Information:

Intron Rank:

144652

Intron Class:

major

Intron Phase:

Intron Coordinates:

146567709 - 146576574

Intron Length:

8866

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGCCAG

5'SS Class:

major

3'SS Sequence:

TTTCTATATGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTTTCTATATGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.2

60.9

45.3

Major BPS

73.8

0.59

1.3

72.8

Major PPT

82.6

0.73

0.9

78.2

34.2

Minor 5ss

33.6

-1.9

2.9

38.9

46.3

Minor BPS

49.6

-0

2.1

70.85

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048126

146562875 - 146577995

15121