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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146581688_146644575_R

Intron Information:

Intron Rank:
147553
Intron Class:
major
Intron Phase:
Intron Coordinates:
146581688 - 146644575
Intron Length:
62888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045865
146581236 - 146644948
63713