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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146602896_146644575_R

Intron Information:

Intron Rank:
147552
Intron Class:
major
Intron Phase:
Intron Coordinates:
146602896 - 146644575
Intron Length:
41680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
AAGCTTTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAGTTCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.8
0.45
0.9
66.9
39.6
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
65
0.47
1.6
73.26
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040177
146602580 - 146644948
42369