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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146602937_146604035_F

Intron Information:

Intron Rank:
123863
Intron Class:
major
Intron Phase:
Intron Coordinates:
146602937 - 146604035
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCCTGACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
100
1.24
0.5
100
0
Major PPT
71.2
0.48
1
66.1
40
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
52.7
-0
1.9
64.32
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030211
146599037 - 146640709
41673
ENSAPLT00000020429
146602580 - 146640901
38322