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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146604165_146639700_F

Intron Information:

Intron Rank:
123864
Intron Class:
major
Intron Phase:
Intron Coordinates:
146604165 - 146639700
Intron Length:
35536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGCT
5'SS Class:
major
3'SS Sequence:
TTGCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
ATACAATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
68.6
36.5
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
85.3
0.79
0.8
80.2
32
Minor 5ss
26.2
-2.7
3.5
38.7
46.6
Minor BPS
56.9
0.3
1.8
75.93
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030211
146599037 - 146640709
41673
ENSAPLT00000020429
146602580 - 146640901
38322