About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14663246_14665591_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14663246 - 14665591
Intron Length:
2346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GGTAATTTATTT
Flanking Amino Acid:
YSVSQSSVSEDFQCMEPLGM
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
47.4
-0.1
1.8
63.27
40.9

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160