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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146639894_146640610_F

Intron Information:

Intron Rank:
123868
Intron Class:
major
Intron Phase:
Intron Coordinates:
146639894 - 146640610
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATCTGCATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
48.6
-0
2
69.95
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038180
146635269 - 146640901
5633
ENSAPLT00000030211
146599037 - 146640709
41673