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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14665759_14683141_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14665759 - 14683141
Intron Length:
17383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTACCA
Flanking Amino Acid:
GEDSAREWIQVDLSLLRFVS
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.1
0.57
0.9
69.4
35.5
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
63.4
0.42
1.9
77.59
38.9

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160