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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146712509_146715500_R

Intron Information:

Intron Rank:
133128
Intron Class:
major
Intron Phase:
Intron Coordinates:
146712509 - 146715500
Intron Length:
2992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGCTGA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AACGTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
59.7
41.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.8
0.78
0.7
80.7
24.5
Minor 5ss
45.7
-0.5
2.5
57
47.2
Minor BPS
58.8
0.26
1.4
60.78
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022764
146677755 - 146718744
40990