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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146714830_146715500_R

Intron Information:

Intron Rank:
133131
Intron Class:
major
Intron Phase:
Intron Coordinates:
146714830 - 146715500
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGCTGA
5'SS Class:
major
3'SS Sequence:
ATATTTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AGTTCTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
59.7
41.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.7
0.6
0.9
70.1
40.5
Minor 5ss
45.7
-0.5
2.5
57
47.2
Minor BPS
70.9
0.73
1.5
83.72
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036248
146714660 - 146717276
2617