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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146715681_146717140_R

Intron Information:

Intron Rank:
133129
Intron Class:
major
Intron Phase:
Intron Coordinates:
146715681 - 146717140
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.4
0.51
1
68.2
36.5
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
63.8
0.43
1.7
71.5
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036248
146714660 - 146717276
2617
ENSAPLT00000022764
146677755 - 146718744
40990