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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146717233_146718661_R

Intron Information:

Intron Rank:
133130
Intron Class:
major
Intron Phase:
Intron Coordinates:
146717233 - 146718661
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGTGTGTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85
0.79
0.9
79.9
37.7
Minor 5ss
31.7
-2.1
3.4
39
46.2
Minor BPS
48.3
-0.1
2.2
63.65
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018860
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022764
146677755 - 146718744
40990