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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146803016_146803721_R

Intron Information:

Intron Rank:
132792
Intron Class:
major
Intron Phase:
Intron Coordinates:
146803016 - 146803721
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCCCCCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
76.3
0.59
0.7
69.4
31.3
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
45.5
-0.2
1.9
58.75
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018668
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033217
146802308 - 146804853
2546