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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146804904_146814443_F

Intron Information:

Intron Rank:
149442
Intron Class:
major
Intron Phase:
Intron Coordinates:
146804904 - 146814443
Intron Length:
9540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGTTGTT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TCTCTTTTCAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
70.2
40.2
Major BPS
66.3
0.41
1
61
37.5
Major PPT
79.4
0.66
1
78.7
33.6
Minor 5ss
33.7
-1.9
3.5
50
46.3
Minor BPS
46.2
-0.4
1.9
52.95
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030411
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046518
146803631 - 146814468
10838