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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146804904_146821154_F

Intron Information:

Intron Rank:
149440
Intron Class:
major
Intron Phase:
Intron Coordinates:
146804904 - 146821154
Intron Length:
16251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGTTGTT
5'SS Class:
major
3'SS Sequence:
CATTTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATCTGTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
70.2
40.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.9
0.69
0.9
77.2
36.7
Minor 5ss
33.7
-1.9
3.5
50
46.3
Minor BPS
48.3
-0
2.1
69.15
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030411
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032114
146803631 - 146821188
17558