About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146804904_146848893_F

Intron Information:

Intron Rank:
149441
Intron Class:
major
Intron Phase:
Intron Coordinates:
146804904 - 146848893
Intron Length:
43990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGTTGTT
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TGTCGTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
70.2
40.2
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
87.8
0.85
0.7
80.3
31.7
Minor 5ss
33.7
-1.9
3.5
50
46.3
Minor BPS
43.6
-0.6
2.3
52.88
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030411
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042501
146803631 - 146848930
45300