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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14683298_14686155_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14683298 - 14686155
Intron Length:
2858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTCCACACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTCTTTCCACA
Flanking Amino Acid:
ITLKEGNKPVVFQGNSNPTD
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
76.5
38.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
60.6
0.24
1.1
60.9
33.5
Minor 5ss
42.7
-0.8
3.1
65.3
39.9
Minor BPS
49
-0
1.9
68.33
38.3

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160