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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14692892_14695810_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14692892 - 14695810
Intron Length:
2919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CACTTTTTAACC
Flanking Amino Acid:
RMELLGCELEAPTAVPTVSE
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.3
0.68
1
77.2
41.6
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
66.9
0.51
1.3
66.28
39.9

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160