About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14695916_14698903_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14695916 - 14698903
Intron Length:
2988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGAAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
ACATGCATAATT
Flanking Amino Acid:
SGTGDDYQLTGGTTVLNTEK
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1
64.4
36.9
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
24.4
-2.9
3.1
30
43.2
Minor BPS
49.5
0.04
2
68.03
43

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160