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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147025878_147027690_R

Intron Information:

Intron Rank:
149415
Intron Class:
major
Intron Phase:
Intron Coordinates:
147025878 - 147027690
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
GTTTTCTTGCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
72.1
0.5
1
69.3
36.9
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
46.8
-0.1
3.4
78.89
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027893
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020912
147025226 - 147028358
3133