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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14706223_14708945_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14706223 - 14708945
Intron Length:
2723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCACAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTATTCCTAACA
Flanking Amino Acid:
SKTGPIQDHTGDGNFIYSQA
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.6
41.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
69
0.43
1
64.1
36.6
Minor 5ss
43.1
-0.8
2.9
57.5
46.8
Minor BPS
63.2
0.41
1.7
72.55
39.3

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160