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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14709218_14709716_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14709218 - 14709716
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTAACATGAAAA
Flanking Amino Acid:
LLHKSVKHYQVVIEGEIGKG
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
74
0.54
1
69.2
41.8
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
49.3
-0
1.8
65.4
39.6

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160