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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14709811_14711309_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14709811 - 14711309
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACCTTAATAATC
Flanking Amino Acid:
DNHVAQEDCRKSTDVENEID
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
80
0.75
1
78.6
31
Major PPT
73.3
0.52
0.9
74.1
36.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
46.4
-0.2
1.8
54.03
38.1

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160