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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147130330_147130423_F

Intron Information:

Intron Rank:
135245
Intron Class:
major
Intron Phase:
Intron Coordinates:
147130330 - 147130423
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039531
147130110 - 147136489
6380