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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147136261_147137700_R

Intron Information:

Intron Rank:
144387
Intron Class:
major
Intron Phase:
Intron Coordinates:
147136261 - 147137700
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CAGATTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
40.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.9
0.78
0.8
79.9
32.1
Minor 5ss
46
-0.4
2.8
57.8
46.4
Minor BPS
61.4
0.44
1.3
68.93
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024968
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047535
147135987 - 147138492
2506