About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147150984_147169500_F

Intron Information:

Intron Rank:
150012
Intron Class:
major
Intron Phase:
Intron Coordinates:
147150984 - 147169500
Intron Length:
18517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATCACTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
87.6
0.85
0.7
80.1
32
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
53
0.07
1.6
60.9
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027755
147150754 - 147171994
21241