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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147169545_147171300_F

Intron Information:

Intron Rank:
150013
Intron Class:
major
Intron Phase:
Intron Coordinates:
147169545 - 147171300
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTGCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
79.3
0.66
0.8
72
32.7
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
52.1
-0
1.9
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027755
147150754 - 147171994
21241