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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147247877_147252328_F

Intron Information:

Intron Rank:
138237
Intron Class:
major
Intron Phase:
Intron Coordinates:
147247877 - 147252328
Intron Length:
4452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84
0.76
0.8
80.8
29.7
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
84.5
1.08
1
88.93
27

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041881
147247289 - 147252898
5610