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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147252695_147260789_R

Intron Information:

Intron Rank:
135309
Intron Class:
major
Intron Phase:
Intron Coordinates:
147252695 - 147260789
Intron Length:
8095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTAATCC
5'SS Class:
major
3'SS Sequence:
TTCTGTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTCTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1
60.6
32.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.9
0.76
0.8
79.1
32.9
Minor 5ss
39.2
-1.2
3
51.1
45.6
Minor BPS
70.4
0.72
1.7
88.99
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020195
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037273
147252508 - 147317912
65405