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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14744619_14745917_R

Intron Information:

Intron Rank:
132204
Intron Class:
major
Intron Phase:
Intron Coordinates:
14744619 - 14745917
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCCAAAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
53.6
-0
2.1
69.83
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018398
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039002
14742301 - 14746603
4303