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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14746220_14748521_F

Intron Information:

Intron Rank:
138464
Intron Class:
major
Intron Phase:
Intron Coordinates:
14746220 - 14748521
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTGTCATAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
50.4
0.09
1.9
74.93
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024553
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035585
14745133 - 14749312
4180