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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147495229_147532802_R

Intron Information:

Intron Rank:
142889
Intron Class:
major
Intron Phase:
Intron Coordinates:
147495229 - 147532802
Intron Length:
37574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCTCCCATACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
85.1
0.79
0.8
76.7
37.4
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
48.2
-0.2
2
57.51
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024186
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039439
147494626 - 147533624
38999