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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147541651_147544917_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147541651 - 147544917
Intron Length:
3267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTTT
5'SS Class:
major
3'SS Sequence:
TTTCTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCTTCTAAACT
Flanking Amino Acid:
NSVEGLLNALRYTTKHLNDE
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
71.8
40.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.7
0.62
0.9
77.1
37.1
Minor 5ss
48.8
-0.1
3.1
73.8
42.7
Minor BPS
65.1
0.55
1.7
78.66
44.1

Associated Gene:

Gene:
FAM49B
Ensembl Gene ID:
ENSAPLG00000000687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000956
147541587 - 147558753
17167
ENSAPLT00000000943
147541587 - 147582741
41155
ENSAPLT00000031977
147541587 - 147558753
17167
ENSAPLT00000028696
147541587 - 147557869
16283
ENSAPLT00000023157
147541587 - 147571045
29459