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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147544989_147545877_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147544989 - 147545877
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
GAFAKTSKIDMKGCIKVLKD
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.6
0.67
0.8
71.3
39.5
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
FAM49B
Ensembl Gene ID:
ENSAPLG00000000687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000956
147541587 - 147558753
17167
ENSAPLT00000000943
147541587 - 147582741
41155
ENSAPLT00000031977
147541587 - 147558753
17167
ENSAPLT00000028696
147541587 - 147557869
16283
ENSAPLT00000023157
147541587 - 147571045
29459