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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147547167_147548228_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147547167 - 147548228
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CAGTAATTAAAT
Flanking Amino Acid:
SDATTKFVSENKNLPIENTT
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
48.6
-0
1.9
64.96
44.6

Associated Gene:

Gene:
FAM49B
Ensembl Gene ID:
ENSAPLG00000000687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000956
147541587 - 147558753
17167
ENSAPLT00000000943
147541587 - 147582741
41155
ENSAPLT00000031977
147541587 - 147558753
17167
ENSAPLT00000028696
147541587 - 147557869
16283
ENSAPLT00000023157
147541587 - 147571045
29459