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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147548523_147549123_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147548523 - 147549123
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CATATCTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
TCTTCCATATCT
Flanking Amino Acid:
HFTLRFDELKMTNPAIQNDF
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
68.4
0.41
0.9
62.8
38.2
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
64.5
0.53
1.9
84.93
41.5

Associated Gene:

Gene:
FAM49B
Ensembl Gene ID:
ENSAPLG00000000687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000956
147541587 - 147558753
17167
ENSAPLT00000000943
147541587 - 147582741
41155
ENSAPLT00000031977
147541587 - 147558753
17167
ENSAPLT00000028696
147541587 - 147557869
16283
ENSAPLT00000023157
147541587 - 147571045
29459