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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147551733_147558670_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147551733 - 147558670
Intron Length:
6938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATGTATGTAATA
Flanking Amino Acid:
NAAHFFLDFENAQPTESEKE
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
74.7
0.56
0.9
73.5
36.7
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
47.9
-0.1
2.1
62.06
38.8

Associated Gene:

Gene:
FAM49B
Ensembl Gene ID:
ENSAPLG00000000687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031977
147541587 - 147558753
17167