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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147557658_147558670_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
147557658 - 147558670
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76.2
0.59
1
72.8
37.5
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
FAM49B
Ensembl Gene ID:
ENSAPLG00000000687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000956
147541587 - 147558753
17167