Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_147571007_147582661_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

147571007 - 147582661

Intron Length:

11655

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAACACT

5'SS Class:

major

3'SS Sequence:

TCTTTTGAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATTTTCATAATC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

70.4

39.6

Major BPS

100

1.24

0.5

100

Major PPT

72.9

0.51

69.8

39.6

Minor 5ss

41.5

-0.9

55.5

Minor BPS

67.8

0.54

1.5

77.37

31.9

Associated Gene:

Gene:

FAM49B

Ensembl Gene ID:

ENSAPLG00000000687

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000943

147541587 - 147582741

41155